﻿<?xml version="1.0" encoding="UTF-8"?>
<ArticleSet>
  <Article>
    <Journal>
      <PublisherName>Tabriz University of Medical Sciences</PublisherName>
      <JournalTitle>BioImpacts</JournalTitle>
      <Issn>2228-5652</Issn>
      <Volume>12</Volume>
      <Issue>4</Issue>
      <PubDate PubStatus="ppublish">
        <Year>2022</Year>
        <Month>07</Month>
        <DAY>01</DAY>
      </PubDate>
    </Journal>
    <ArticleTitle>A fuzzy logic-based computational method for the repurposing of drugs against COVID-19</ArticleTitle>
    <FirstPage>315</FirstPage>
    <LastPage>324</LastPage>
    <ELocationID EIdType="doi">10.34172/bi.2021.40</ELocationID>
    <Language>EN</Language>
    <AuthorList>
      <Author>
        <FirstName>Yosef</FirstName>
        <LastName>Masoudi-Sobhanzadeh</LastName>
        <Identifier Source="ORCID">https://orcid.org/0000-0002-2472-0980</Identifier>
      </Author>
      <Author>
        <FirstName>Hosein</FirstName>
        <LastName>Esmaeili</LastName>
        <Identifier Source="ORCID">https://orcid.org/0000-0003-3762-3909</Identifier>
      </Author>
      <Author>
        <FirstName>Ali</FirstName>
        <LastName>Masoudi-Nejad</LastName>
        <Identifier Source="ORCID">https://orcid.org/0000-0003-0659-5183</Identifier>
      </Author>
    </AuthorList>
    <PublicationType>Journal Article</PublicationType>
    <ArticleIdList>
      <ArticleId IdType="doi">10.34172/bi.2021.40</ArticleId>
    </ArticleIdList>
    <History>
      <PubDate PubStatus="received">
        <Year>2020</Year>
        <Month>10</Month>
        <Day>14</Day>
      </PubDate>
      <PubDate PubStatus="accepted">
        <Year>2021</Year>
        <Month>04</Month>
        <Day>03</Day>
      </PubDate>
    </History>
    <Abstract>Introduction: COVID-19 has spread out all around the world and seriously interrupted human activities. Being a newfound disease, not only many aspects of the disease are unknown, but also there is not an effective medication to cure the disease. Besides, designing a drug is a time-consuming process and needs large investment. Hence, drug repurposing techniques, employed to discover the hidden benefits of the existing drugs, maybe a useful option for treating COVID-19. Methods: The present study exploits the drug repositioning concepts and introduces some candidate drugs which may be effective in controlling COVID-19. The suggested method consists of three main steps. First, the required data such as the amino acid sequences of targets and drug-target interactions are extracted from the public databases. Second, the similarity score between the targets (protein/enzymes) and genome of SARS-COV-2 is computed using the proposed fuzzy logic-based method. Since the classical approaches yield outcomes which may not be useful for the real-world applications, the fuzzy technique can address the issue. Third, after ranking targets based on the obtained scores, the usefulness of drugs affecting them is examined for managing COVID-19. Results: The results indicate that antiviral medicines, designed for curing hepatitis C, may also cure COVID-19. According to the findings, ribavirin, simeprevir, danoprevir, and XTL-6865 may be helpful in controlling the disease. Conclusion: It can be concluded that the similarity-based drug repurposing techniques may be the most suitable option for managing emerging diseases such as COVID-19 and can be applied to a wide range of data. Also, fuzzy logic-based scoring methods can produce outcomes which are more consistent with the real-world biological applications than others.</Abstract>
    <ObjectList>
      <Object Type="keyword">
        <Param Name="value">Computational method</Param>
      </Object>
      <Object Type="keyword">
        <Param Name="value">COVID-19</Param>
      </Object>
      <Object Type="keyword">
        <Param Name="value">Drug repurposing</Param>
      </Object>
      <Object Type="keyword">
        <Param Name="value">Fuzzy logic</Param>
      </Object>
      <Object Type="keyword">
        <Param Name="value">Hepatitis</Param>
      </Object>
    </ObjectList>
  </Article>
</ArticleSet>